Plant intron-splicing efficiency database
WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq … WebApr 11, 2024 · Searching for the FLK-interacting proteins by performing a yeast-two-hybrid assay or co-immunoprecipitation followed by mass spectrometry will shed additional light on the role of FLK and its interacting proteins in regulating the stability of FLC transcripts. FLC transcript levels are also regulated by intron splicing (reviewed in Qi et al ...
Plant intron-splicing efficiency database
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WebNov 18, 2024 · Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice, and soybean from ∼57,000 public RNA-seq …
WebThe RT-qPCR analyses further revealed a strong reduction in the splicing efficiency of nad2 intron 1 in misf2 plants . The most probable RNA-binding site for MISF2 protein (i.e., GUGAGGCG) resides within the D1 stem-loop of nad2 intron 1 ( Figure 5 ), which also corresponds to the genetic and biochemical RNA target of MISF2 ( Figure 3 , Figure ... WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ~1,650,000 introns in Arabidopsis, maize, rice and soybean from ~57,000 public RNA-seq …
WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq libraries bioRxiv Skip to main content Home Submit FAQ Blog ALERTS / RSS About Channels Advanced Search bioRxiv posts many COVID19-related papers. WebA large-scale analysis of splice sites in eight plant species is performed, using novel algorithms and tools developed by the authors, and putative intronic and exonic cis-regulatory motifs, U12 introns as well as splicing sites in 45 microRNA genes in five plant species are identified. Splicing is one of the major contributors to observed …
WebAres Lab Yeast Intron Database. Search for information about the spliceosomal introns of the yeast Saccharomyces cerevisiae. ... gene structure prediction in plant genomes. Predict gene structures of plant genomes. ... H-DBAS -- Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H ...
WebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicingof~1,650,000intronsinArabidopsis,maize,riceand soybeanfrom~57,000publicRNA … brown university men\u0027s hockeyWebJan 7, 2013 · Keeping in mind the above-mentioned insufficiency of plant data, we have performed large-scale analyses of plant introns and splice sites in eight species: A. thaliana, Chlamydomonas reinhardtii, Glycine max, Oryza sativa, Physcomitrella patens, Selaginella moellendorffii, V. vinifera and Zea mays. brown university men\u0027s basketball rosterWebThe process of intron splicing in higher plant genes involves interaction between multiple cis-acting elements and trans-acting factors, such as 5′ splicing site, 3′ splicing site and … evh serviceshttp://plantintron.com/tutorial.php evhs cougarsWebFeb 28, 2024 · These partially complemented mutants have a dramatic decrease in the splicing efficiency of six mitochondrial introns, five of which are located in nad transcripts, which encode subunits of Complex I. Our data show that the assembly of complex I is seriously compromised as a result of the defective splicing. evhs finals scheduleWebThen they move on, leaving behind a specific intron sequence flanked by splicing sites, which splits the coding DNA into two exons. This process can be repeated on a massive scale throughout a genome. In fungi, for example, introners appear to account for most of the intron gain during at least the last 100,000 years. evhs finalsWebDec 9, 2024 · Moreover, the splicing efficiency of nad1 introns 1 and 4 and nad4 intron 1 significantly decreased in dek55 compared with the wild type (WT). These results indicate that DEK55 plays a crucial role in RNA editing at multiple sites as well as in the splicing of nad1 and nad4 introns. evhs football helmet